miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|30079248|gb|CB877262.1|CB877262 CGGCACGAGGCAAAGGGAGCATTTACATGGTCTTTGAGTACATGGACCATGACTTGACTGGGTTGGCTGATAAGCCTGGG
ATGCGCTTCACCATTCCACAGATTAAGTGCTACATGAAGCAACTCCTCACGGGCCTTCACTATTGCCATATCAATCAAGT
TCTGCATCGTGATATTAAAGGATCTAACCTCTTGATAGACAATGAGGGTAACTTAAAACTGGCTGATTTTGGCCTAGCAA
GATCATTTTCGAATGATCATAATGCAAACCTCACTAACCGTGTGATCACTTTGTGGTACAGACCTCCAGAGTTGCTGCTA
GGAAGCACAAAATATGGGCCAGCGGTGGACATGTGGTCGGTGGGTTGTATTTTTGCAGAGCTTCTCAATGGAAAGCCAAT
ACTGCCTGNAAAGAATGAGCCAGACCAACTGACCAAAATATTCGAGCTTTGTGGTACCCCTGATGAATTGATTTGGCCGG
GTGTGACAAAAATGCCGTGGTATAATAATTTG




Most similar to sp|Q6I5Y0|CDKC1_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6I5Y0|CDKC1_ORYSJ Cyclin-dependent kinase C-1 OS=Oryza sativa
           subsp. japonica GN=CDKC-1 PE=2 SV=1
          Length = 519

 Score =  339 bits (870), Expect = 5e-93
 Identities = 156/166 (93%), Positives = 162/166 (97%)
 Frame = +3

Query: 12  KGSIYMVFEYMDHDLTGLADKPGMRFTIPQIKCYMKQLLTGLHYCHINQVLHRDIKGSNL 191
           KGSIYMVFEYMDHDLTGLAD+PGMRFT+PQIKCYMKQLLTGLHYCHINQVLHRDIKGSNL
Sbjct: 111 KGSIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMKQLLTGLHYCHINQVLHRDIKGSNL 170

Query: 192 LIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCI 371
           LIDNEGNLKLADFGLARSFSNDHN NLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCI
Sbjct: 171 LIDNEGNLKLADFGLARSFSNDHNGNLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCI 230

Query: 372 FAELLNGKPILPXKNEPDQLTKIFELCGTPDELIWPGVTKMPWYNN 509
           FAELLNGKPILP KNEP+QL+KIF++CGTPDE  WPGVTKMPWYNN
Sbjct: 231 FAELLNGKPILPGKNEPEQLSKIFDVCGTPDESNWPGVTKMPWYNN 276